Tables and Figures (Notebook)

from pathlib import Path
from encoders.tables import gt_regression_params, gt_software_practices
from encoders.plot import plot_figure1
from encoders.utils import load_config
from matplotlib import pyplot as plt

Tables¶

The cells below render the imported tables.

gt_regression_params

gt_software_practices

Figures¶

Below we use encoders.plots.plot_figure1 to reproduce plots that were shown in Figure 1

Figure 1¶

%matplotlib agg
RUNS_DIR = load_config()["RUNS_DIR"]
figs = plot_figure1(
    reproduction_dir=Path(RUNS_DIR, "reproduction"),
    replication_ridgeCV_dir=Path(RUNS_DIR, "replication_ridgeCV"),
    save_figures=False,
    save_path=None,
)

Reproduction (Panel B)¶

figs[0] # render first figure

figs[2] # render the brain plot

Replication (Panel C)¶

figs[1]

figs[3]